• 中国科学论文统计源期刊
  • 中国科技核心期刊
  • 美国化学文摘(CA)来源期刊
  • 日本科学技术振兴机构数据库(JST)

临床输血与检验 ›› 2024, Vol. 26 ›› Issue (2): 213-222.DOI: 10.3969/j.issn.1671-2587.2024.02.009

• 中西医结合输血专题 • 上一篇    下一篇

基于网络药理学与分子对接探讨桃红四物汤对血小板活化的作用机制*

严美玲, 朱培元   

  1. 南京中医药大学附属南京中医院,江苏南京 210022
  • 收稿日期:2024-01-03 出版日期:2024-04-20 发布日期:2024-04-23
  • 通讯作者: 朱培元,主要从事中西医结合输血研究,(E-mail)zhupy@njucm.edu.cn。
  • 作者简介:严美玲,主要从事中西医结合临床工作,(E-mail)y1592012529@163.com。
  • 基金资助:
    *本课题受南京市卫生科技发展专项资金项目(No.YKK21195)资助、江苏省输血协会英科新创科研基金(No.JS2022006)资助

Exploring the Mechanism of Action of Taohongsiwu Decoction on Platelet Activation Based on Network Pharmacology and Molecular Docking

YAN Meiling, ZHU Peiyuan   

  1. Nanjing Hospital of Chinese Medicine Affiliated to Nanjing University of Chinese Medicine, Nanjing 210022
  • Received:2024-01-03 Online:2024-04-20 Published:2024-04-23

摘要: 目的 采用网络药理学和分子对接技术探讨桃红四物汤对血小板活化的作用机制,为后续实验研究及临床应用提供参考。方法 首先通过TCMSP数据库获得桃红四物汤中的主要活性成分及其对应作用靶点信息;通过GeneCard、OMIM、TTD等数据库获得与血小板活化相关的靶点;其次利用Venny图将桃红四物汤中有效成分对应靶点基因与血小板活化靶点基因相映射,筛选两者之间的共有靶点,借助STRING平台及Cytoscape 3.7.1软件,绘制交集基因蛋白互作(PPI)网络图;然后利用基因注释、可视化和综合发现数据库(David)对核心靶点进行基因本体(GO)生物功能富集分析及京都基因与基因组百科全书(KEGG)通路富集分析,通过微生信云平台对富集结果可视化;最后借助AutoDock Tools软件对核心成分及关键靶点基因进行分子对接,筛选出桃红四物汤中的重要成分及其作用于血小板活化过程中的重要靶点,为后续对核心成分抑制血小板活化作用进行实验验证提供重要依据。结果 按照一定条件共筛选出69个桃红四物汤有效成分及2 175个血小板活化的靶点,去除重复后获得44个桃红四物汤作用于血小板活化的有效成分和154个关键交集靶点,利用PPI网络分析及相关文献最终获得5个关键靶点,包括蛋白激酶B1(AKTI)、前列腺素内过氧化物合酶1(PTGS1/COX1)、Ⅰ型胶原蛋白α1(COL1A1)、Ⅲ型胶原蛋白α1(COL3A1)、磷脂酰肌醇4,5-二磷酸3-激酶催化亚基 γ(PIK3CG/PI3K);通过GO功能和KEGG通路富集分析显示,桃红四物汤作用于血小板活化过程中的血小板活化、内皮细胞迁移的正调控、血小板聚集、血小板α颗粒释放、整合素结合等生物学过程,调控血小板活化、C型凝集素受体信号通路、PI3K-Akt等信号通路,进而发挥抑制血小板活化作用。分子对接结果显示,桃红四物汤的5个主要活性成分与关键靶点间存在分子结合位点且结合能较强,均小于-5 kcal/mol。结论 本研究初步揭示了桃红四物汤抑制血小板活化的过程中其作用机理可能是通过作用于多靶点和多通路来实现的。

关键词: 桃红四物汤, 血小板活化, 网络药理学, 分子对接

Abstract: Objective To provide reference for subsequent experimental research and clinical application, the mechanism of Taohongsiwu decoction on platelet activation was explored by network pharmacology and molecular docking technology. Methods First,we obtained the information of the main active ingredients and their corresponding targets in Taohongsiwu decoction from TCMSP database, and the targets related to platelet activation from GeneCard, OMIM, TTD and other databases; secondly, we used the Venny diagram to match the target genes corresponding to the active ingredients in Taohongsiwu decoction to the target genes of platelet activation, and then we screened the common targets between the two. Then, using the STRING platform and Cytoscape 3.7.1 software, we mapped the intersecting gene-protein interactions (PPI) network; then, we used the Gene Annotation, Visualization and Comprehensive Discovery Database (David) database to perform gene ontology (GO) biofunctional enrichment and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses of the core targets, and then we used the Microbiology Cloud Platform to analyze the enrichment of the core targets. The enrichment results were visualized on the Microbiology Cloud Platform; finally, molecular docking of the core components and key target genes were carried out with the help of AutoDock Tools software to screen out the important components of Taohongsiwu decoction and their important targets in the process of platelet activation, which provided an important basis for the subsequent experimental validation on the inhibition of platelet activation by the core components. Results A total of 69 active ingredients and 2 175 targets of platelet activation in Taohongsiwu decoction were screened according to certain conditions, and after removing duplicates, 44 active ingredients and 154 key intersecting targets of platelet activation in Taohongsiwu decoction were obtained, and five key targets were finally obtained by using PPI network analysis and related literature, including protein kinase B1 (AKTI),prostaglandin endoperoxide synthase 1 (PTGS1/COX1). collagen type I α1 (COL1A1), collagen type III α1 (COL3A1), and phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit γ (PIK3CG/PI3K); the analysis of the GO function and KEGG pathway enrichment showed that the peach red tetrapod soup acted on platelet activated during the platelet activation, Positive regulation of endothelial cell migration, platelet aggregation, platelet α-granule lumen, integrin binding and other biological processes in the process of platelet activation, regulating platelet activation, C-type lectin receptor signaling pathway, PI3K-Akt and other signaling pathways, and thus exerting inhibitory effects on platelet activation. The results of molecular docking showed that there were molecular binding sites between the five main active ingredients of Taohongsiwu decoction and the key targets and the binding energies were strong, all of which were less than -5 kcal /mol. Conclusion This study initially revealed that the mechanism of the inhibition of platelet activation by Taohongsiwu decoction may be realized through the action of multi-targets and multi-pathways.

Key words: Taohongsiwu decoction, Platelet activation, Pharmacology, Molecular docking

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